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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
THCA rs78650132 chr2:132202494 A/G CCDC74B chr2:130896860-130902707:- 0.37 6.65 8.06E-11 Box Plot
THCA rs7866436 chr9:100650096 G/A FAM81A chr15:59664892-59815748:+ -0.25 -6.04 3.17E-9 Box Plot
THCA rs78668304 chr5:43673589 G/A UQCRC1 chr3:48636435-48648409:- -0.34 -5.97 4.51E-9 Box Plot
THCA rs78698412 chr5:49446146 T/C LOC647121 chr1:121260910-121313686:+ -0.36 -7.65 1.15E-13 Box Plot
THCA rs7870871 chr9:100581427 T/C NKX6-1 chr4:85413140-85419603:- 0.38 5.89 7.21E-9 Box Plot
THCA rs78724500 chr5:43826645 C/A UQCRC1 chr3:48636435-48648409:- -0.35 -6.07 2.66E-9 Box Plot
THCA rs78777972 chr3:90180038 T/TATG STX19 chr3:93733213-93747454:- 0.48 6.58 1.23E-10 Box Plot
THCA rs78806914 chr2:132199973 C/T CCDC74B chr2:130896860-130902707:- 0.37 6.66 7.44E-11 Box Plot
THCA rs78853757 chr3:90146579 C/T STX19 chr3:93733213-93747454:- 0.41 6 3.83E-9 Box Plot
THCA rs78865022 chr2:101142724 G/A LOC285359 chr3:101431278-101432259:+ 0.36 6.11 2.07E-9 Box Plot
THCA rs78884965 chr10:67462559 A/G RGPD8 chr2:113127669-113192065:- 0.37 6.03 3.33E-9 Box Plot
THCA rs78885161 chr1:121242495 C/G NBPF14 chr1:148003642-148025863:- 0.44 10.25 2.03E-22 Box Plot
THCA rs7894916 chr10:51818234 A/T FAM21B chr10:47894023-47949412:+ 0.59 7.61 1.47E-13 Box Plot
THCA rs78962237 chr2:101080325 T/C LOC285359 chr3:101431278-101432259:+ 0.36 6.8 3.14E-11 Box Plot
THCA rs7897841 chr10:51824067 A/G FAM21B chr10:47894023-47949412:+ 0.48 7.56 2.09E-13 Box Plot